scholarly journals Single-molecule manipulation of double-stranded DNA using optical tweezers: Interaction studies of DNA with RecA and YOYO-1

Cytometry ◽  
1999 ◽  
Vol 36 (3) ◽  
pp. 200-208 ◽  
Author(s):  
Martin L. Bennink ◽  
Orlando D. Sch�rer ◽  
Roland Kanaar ◽  
Kumiko Sakata-Sogawa ◽  
Juleon M. Schins ◽  
...  
2012 ◽  
Vol 26 (13) ◽  
pp. 1230006 ◽  
Author(s):  
WEI-HUNG CHEN ◽  
JONATHAN D. WILSON ◽  
SITHARA S. WIJERATNE ◽  
SARAH A. SOUTHMAYD ◽  
KUAN-JIUH LIN ◽  
...  

Recent advances in nanoscale manipulation and piconewton force detection provide a unique tool for studying the mechanical and thermodynamic properties of biological molecules and complexes at the single-molecule level. Detailed equilibrium and dynamics information on proteins and DNA have been revealed by single-molecule manipulation and force detection techniques. The atomic force microscope (AFM) and optical tweezers have been widely used to quantify the intra- and inter-molecular interactions of many complex biomolecular systems. In this article, we describe the background, analysis, and applications of these novel techniques. Experimental procedures that can serve as a guide for setting up a single-molecule manipulation system using the AFM are also presented.


2015 ◽  
Vol 108 (2) ◽  
pp. 69a
Author(s):  
Georgii Pobegalov ◽  
Alexandr Alekseev ◽  
Anton Sabantsev ◽  
Alexey Melnikov ◽  
Mikhail Khodorkovskiy ◽  
...  

2021 ◽  
Author(s):  
Yukun Wang ◽  
Huaizhou Jin ◽  
Yongli Zhang

Despite their wide applications into soluble macromolecules, optical tweezers have rarely been used to characterize dynamics of membrane proteins, mainly due to lack of model membranes compatible with optical trapping. Here, we found that optical tweezers can stably trap giant unilamellar vesicles (GUVs) containing iodixanol with controlled membrane tension, which can potentially serve as a model membrane to study dynamics of membranes, membrane proteins, or their interactions. We also observed that small unilamellar vesicles (SUVs) are rigid enough to resist large pulling force and offer potential advantages to pull membrane proteins. To demonstrate the use of both model membranes, we pulled membrane tethers from the trapped GUVs and measured the folding or binding dynamics of a single DNA hairpin or synaptotagmin-1 C2 domain attached to the GUV or SUV with high spatiotemporal resolution. Our methodologies facilitate single-molecule manipulation studies of membranes or membrane proteins using optical tweezers.


2020 ◽  
Vol 56 (14) ◽  
pp. 2123-2126 ◽  
Author(s):  
Yang Cui ◽  
Yangchao Tang ◽  
Meng Liang ◽  
Qinghua Ji ◽  
Yan Zeng ◽  
...  

An optical tweezers-based single-molecule manipulation assay was developed to detect the formation of an R-loop complex in the CRISPR–Cas12a system.


2021 ◽  
Vol 1 (1) ◽  
Author(s):  
Carlos J. Bustamante ◽  
Yann R. Chemla ◽  
Shixin Liu ◽  
Michelle D. Wang

2014 ◽  
Vol 10 (2) ◽  
pp. e1003456 ◽  
Author(s):  
Pascal Carrivain ◽  
Maria Barbi ◽  
Jean-Marc Victor

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